Comparative analysis of the terpenoid biosynthesis pathway in Azadirachta indica and Melia azedarach by RNA-seq
Identifieur interne : 000283 ( Main/Exploration ); précédent : 000282; suivant : 000284Comparative analysis of the terpenoid biosynthesis pathway in Azadirachta indica and Melia azedarach by RNA-seq
Auteurs : Yuwei Wang [République populaire de Chine] ; Xiang Chen [République populaire de Chine] ; Jin Wang [République populaire de Chine] ; Hang Xun [République populaire de Chine] ; Jia Sun [République populaire de Chine] ; Feng Tang [République populaire de Chine]Source :
- SpringerPlus [ 2193-1801 ] ; 2016.
Abstract
The online version of this article (doi:10.1186/s40064-016-2460-6) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s40064-016-2460-6
PubMed: 27390659
PubMed Central: 4916121
Affiliations:
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type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Chen, Xiang" sort="Chen, Xiang" uniqKey="Chen X" first="Xiang" last="Chen">Xiang Chen</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Jin" sort="Wang, Jin" uniqKey="Wang J" first="Jin" last="Wang">Jin Wang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Xun, Hang" sort="Xun, Hang" uniqKey="Xun H" first="Hang" last="Xun">Hang Xun</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Sun, Jia" sort="Sun, Jia" uniqKey="Sun J" first="Jia" last="Sun">Jia Sun</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Tang, Feng" sort="Tang, Feng" uniqKey="Tang F" first="Feng" last="Tang">Feng Tang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27390659</idno><idno type="pmc">4916121</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4916121</idno><idno type="RBID">PMC:4916121</idno><idno type="doi">10.1186/s40064-016-2460-6</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000703</idno><idno type="wicri:Area/Pmc/Curation">000702</idno><idno type="wicri:Area/Pmc/Checkpoint">000229</idno><idno type="wicri:Area/Ncbi/Merge">002103</idno><idno type="wicri:Area/Ncbi/Curation">002103</idno><idno type="wicri:Area/Ncbi/Checkpoint">002103</idno><idno type="wicri:Area/Main/Merge">000283</idno><idno type="wicri:Area/Main/Curation">000283</idno><idno type="wicri:Area/Main/Exploration">000283</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Comparative analysis of the terpenoid biosynthesis pathway in <italic>Azadirachta indica</italic> and <italic>Melia azedarach</italic> by RNA-seq</title><author><name sortKey="Wang, Yuwei" sort="Wang, Yuwei" uniqKey="Wang Y" first="Yuwei" last="Wang">Yuwei Wang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Chen, Xiang" sort="Chen, Xiang" uniqKey="Chen X" first="Xiang" last="Chen">Xiang Chen</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Jin" sort="Wang, Jin" uniqKey="Wang J" first="Jin" last="Wang">Jin Wang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Xun, Hang" sort="Xun, Hang" uniqKey="Xun H" first="Hang" last="Xun">Hang Xun</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Sun, Jia" sort="Sun, Jia" uniqKey="Sun J" first="Jia" last="Sun">Jia Sun</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Tang, Feng" sort="Tang, Feng" uniqKey="Tang F" first="Feng" last="Tang">Feng Tang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing, 100102 People’s Republic of China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Bamboo and Rattan Science and Technology of State Forestry Administration, International Center for Bamboo and Rattan, No. 8, Futong East Street, Wangjing Area, Chaoyang District, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">SpringerPlus</title><idno type="eISSN">2193-1801</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Azadirachta indica</italic> (neem) is the only source of azadirachtin, which is known for its insecticide activity. <italic>Melia azedarach</italic> is a related species of <italic>A. indica</italic>, widely distributed in the south of China. In this study, the leaf transcriptomes of these two <italic>Meliaceae</italic> plants were sequenced. More than 40 million clean reads were generated from each library. About 80 % of <italic>A. indica</italic> reads were mapped to the neem genome, while 93 % of <italic>M. azedarach</italic> reads were mapped to its assembled transcripts and unigenes dateset. After mapping and assembly, 225,972 transcripts and 91,607 unigenes of <italic>M. azedarach</italic> were obtained and 1179 new genes of <italic>A. indica</italic> were detected. Comparative analysis of the annotated differentially expressed genes (DEG) showed that all six DEGs involved in terpenoid backbone biosynthesis were up-regulated in <italic>A. indica</italic>. Chemical analysis of the two plants revealed <italic>A. indica</italic> leaves contained 2.45 % total terpenoid and nearly 20–50 µg azadirachtin per gram, whereas azadirachtin was not detected in <italic>M. azedarach</italic> and total terpenoid content was reached 1.67 %. These results give us a better insight into the transcriptomes differences between <italic>A. indica</italic> and <italic>M. azedarach</italic>, and help us to understand the terpenoid biosynthesis pathway in vivo.</p><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s40064-016-2460-6) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Atawodi, S" uniqKey="Atawodi S">S Atawodi</name></author><author><name sortKey="Atawodi, J" uniqKey="Atawodi J">J Atawodi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Athanassiou, Cg" uniqKey="Athanassiou C">CG Athanassiou</name></author><author><name sortKey="Kontodimas, Dc" uniqKey="Kontodimas D">DC Kontodimas</name></author><author><name sortKey="Kavallieratos, Ng" uniqKey="Kavallieratos N">NG 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sortKey="Luo, Xd" uniqKey="Luo X">XD Luo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thoh, M" uniqKey="Thoh M">M Thoh</name></author><author><name sortKey="Kumar, P" uniqKey="Kumar P">P Kumar</name></author><author><name sortKey="Nagarajaram, Ha" uniqKey="Nagarajaram H">HA Nagarajaram</name></author><author><name sortKey="Manna, Sk" uniqKey="Manna S">SK Manna</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Trapnell, C" uniqKey="Trapnell C">C Trapnell</name></author><author><name sortKey="Williams, Ba" uniqKey="Williams B">BA Williams</name></author><author><name sortKey="Pertea, G" uniqKey="Pertea G">G Pertea</name></author><author><name sortKey="Mortazavi, A" uniqKey="Mortazavi A">A Mortazavi</name></author><author><name sortKey="Kwan, G" uniqKey="Kwan G">G Kwan</name></author><author><name sortKey="Van Baren, Mj" uniqKey="Van Baren M">MJ van Baren</name></author><author><name sortKey="Salzberg, Sl" uniqKey="Salzberg S">SL Salzberg</name></author><author><name sortKey="Wold, Bj" uniqKey="Wold B">BJ Wold</name></author><author><name sortKey="Pachter, L" uniqKey="Pachter L">L Pachter</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Veitch, Ge" uniqKey="Veitch G">GE Veitch</name></author><author><name sortKey="Beckmann, E" uniqKey="Beckmann E">E Beckmann</name></author><author><name sortKey="Burke, Bj" uniqKey="Burke B">BJ Burke</name></author><author><name sortKey="Boyer, A" uniqKey="Boyer A">A Boyer</name></author><author><name sortKey="Maslen, Sl" uniqKey="Maslen S">SL Maslen</name></author><author><name sortKey="Ley, Sv" uniqKey="Ley S">SV Ley</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Wang, Yuwei" sort="Wang, Yuwei" uniqKey="Wang Y" first="Yuwei" last="Wang">Yuwei Wang</name></noRegion><name sortKey="Chen, Xiang" sort="Chen, Xiang" uniqKey="Chen X" first="Xiang" last="Chen">Xiang Chen</name><name sortKey="Sun, Jia" sort="Sun, Jia" uniqKey="Sun J" first="Jia" last="Sun">Jia Sun</name><name sortKey="Tang, Feng" sort="Tang, Feng" uniqKey="Tang F" first="Feng" last="Tang">Feng Tang</name><name sortKey="Wang, Jin" sort="Wang, Jin" uniqKey="Wang J" first="Jin" last="Wang">Jin Wang</name><name sortKey="Xun, Hang" sort="Xun, Hang" uniqKey="Xun H" first="Hang" last="Xun">Hang Xun</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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